Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HNF4AP41235 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.47■■□□□ 1.19
HNF4AP41235 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.47■■□□□ 1.19
HNF4AP41235 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HNF4AP41235 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HNF4AP41235 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.46■■□□□ 1.19
HNF4AP41235 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HNF4AP41235 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HNF4AP41235 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.46■■□□□ 1.19
HNF4AP41235 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.46■■□□□ 1.19
HNF4AP41235 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HNF4AP41235 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HNF4AP41235 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.45■■□□□ 1.18
HNF4AP41235 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
HNF4AP41235 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
HNF4AP41235 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.45■■□□□ 1.18
HNF4AP41235 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.45■■□□□ 1.18
HNF4AP41235 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.45■■□□□ 1.18
HNF4AP41235 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HNF4AP41235 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HNF4AP41235 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
HNF4AP41235 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.44■■□□□ 1.18
HNF4AP41235 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HNF4AP41235 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.43■■□□□ 1.18
HNF4AP41235 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.43■■□□□ 1.18
HNF4AP41235 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
HNF4AP41235 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
HNF4AP41235 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.43■■□□□ 1.18
HNF4AP41235 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.43■■□□□ 1.18
HNF4AP41235 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.43■■□□□ 1.18
HNF4AP41235 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.43■■□□□ 1.18
HNF4AP41235 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
HNF4AP41235 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
HNF4AP41235 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HNF4AP41235 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
HNF4AP41235 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.42■■□□□ 1.18
HNF4AP41235 AC022616.5-201ENST00000518796 181 ntBASIC22.42■■□□□ 1.18
HNF4AP41235 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HNF4AP41235 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
HNF4AP41235 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
HNF4AP41235 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HNF4AP41235 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HNF4AP41235 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HNF4AP41235 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HNF4AP41235 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.4■■□□□ 1.18
HNF4AP41235 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HNF4AP41235 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HNF4AP41235 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.39■■□□□ 1.18
HNF4AP41235 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
HNF4AP41235 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.39■■□□□ 1.18
HNF4AP41235 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
HNF4AP41235 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
HNF4AP41235 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HNF4AP41235 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HNF4AP41235 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.39■■□□□ 1.17
HNF4AP41235 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.39■■□□□ 1.17
HNF4AP41235 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HNF4AP41235 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.38■■□□□ 1.17
HNF4AP41235 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
HNF4AP41235 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 AC011551.1-201ENST00000614101 683 ntBASIC22.38■■□□□ 1.17
HNF4AP41235 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.38■■□□□ 1.17
HNF4AP41235 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HNF4AP41235 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HNF4AP41235 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HNF4AP41235 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
HNF4AP41235 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HNF4AP41235 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.37■■□□□ 1.17
HNF4AP41235 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HNF4AP41235 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.37■■□□□ 1.17
HNF4AP41235 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.36■■□□□ 1.17
HNF4AP41235 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 AC103834.1-201ENST00000520383 144 ntBASIC22.36■■□□□ 1.17
HNF4AP41235 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.36■■□□□ 1.17
HNF4AP41235 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms