Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1AO00555 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1AO00555 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CACNA1AO00555 AC136469.2-201ENST00000623944 1028 ntBASIC22.51■■□□□ 1.19
CACNA1AO00555 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.5■■□□□ 1.19
CACNA1AO00555 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 AC026185.1-201ENST00000445748 174 ntBASIC22.5■■□□□ 1.19
CACNA1AO00555 TERF1P2-201ENST00000583350 1212 ntBASIC22.5■■□□□ 1.19
CACNA1AO00555 AL358852.1-201ENST00000623174 1268 ntBASIC22.5■■□□□ 1.19
CACNA1AO00555 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.5■■□□□ 1.19
CACNA1AO00555 AL355802.2-201ENST00000402069 882 ntBASIC22.5■■□□□ 1.19
CACNA1AO00555 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.5■■□□□ 1.19
CACNA1AO00555 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1AO00555 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.5■■□□□ 1.19
CACNA1AO00555 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.49■■□□□ 1.19
CACNA1AO00555 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1AO00555 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1AO00555 AC142086.2-201ENST00000569753 217 ntBASIC22.49■■□□□ 1.19
CACNA1AO00555 AC006015.1-201ENST00000429970 570 ntBASIC22.49■■□□□ 1.19
CACNA1AO00555 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1AO00555 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1AO00555 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1AO00555 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.48■■□□□ 1.19
CACNA1AO00555 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1AO00555 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.48■■□□□ 1.19
CACNA1AO00555 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.48■■□□□ 1.19
CACNA1AO00555 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1AO00555 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
CACNA1AO00555 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1AO00555 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.48■■□□□ 1.19
CACNA1AO00555 CCDC92B-201ENST00000575506 885 ntBASIC22.48■■□□□ 1.19
CACNA1AO00555 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
CACNA1AO00555 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.47■■□□□ 1.19
CACNA1AO00555 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.47■■□□□ 1.19
CACNA1AO00555 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.47■■□□□ 1.19
CACNA1AO00555 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.47■■□□□ 1.19
CACNA1AO00555 NTF6G-201ENST00000591094 616 ntBASIC22.47■■□□□ 1.19
CACNA1AO00555 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CACNA1AO00555 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CACNA1AO00555 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CACNA1AO00555 AC008687.6-201ENST00000596318 630 ntBASIC22.46■■□□□ 1.19
CACNA1AO00555 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CACNA1AO00555 AC092171.4-201ENST00000609130 632 ntBASIC22.46■■□□□ 1.19
CACNA1AO00555 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.46■■□□□ 1.19
CACNA1AO00555 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CACNA1AO00555 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC22.45■■□□□ 1.18
CACNA1AO00555 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CACNA1AO00555 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CACNA1AO00555 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CACNA1AO00555 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CACNA1AO00555 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC22.44■■□□□ 1.18
CACNA1AO00555 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.44■■□□□ 1.18
CACNA1AO00555 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.44■■□□□ 1.18
CACNA1AO00555 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CACNA1AO00555 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CACNA1AO00555 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CACNA1AO00555 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.43■■□□□ 1.18
CACNA1AO00555 NCF1B-203ENST00000435988 1254 ntBASIC22.43■■□□□ 1.18
CACNA1AO00555 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.43■■□□□ 1.18
CACNA1AO00555 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.43■■□□□ 1.18
CACNA1AO00555 CROCCP5-201ENST00000436658 830 ntBASIC22.43■■□□□ 1.18
CACNA1AO00555 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CACNA1AO00555 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
CACNA1AO00555 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.42■■□□□ 1.18
CACNA1AO00555 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.42■■□□□ 1.18
CACNA1AO00555 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.42■■□□□ 1.18
CACNA1AO00555 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CACNA1AO00555 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
CACNA1AO00555 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.41■■□□□ 1.18
CACNA1AO00555 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CACNA1AO00555 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.41■■□□□ 1.18
CACNA1AO00555 AC073111.5-205ENST00000641717 521 ntBASIC22.41■■□□□ 1.18
CACNA1AO00555 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.41■■□□□ 1.18
CACNA1AO00555 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.41■■□□□ 1.18
CACNA1AO00555 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CACNA1AO00555 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CACNA1AO00555 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CACNA1AO00555 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CACNA1AO00555 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.4■■□□□ 1.18
CACNA1AO00555 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.4■■□□□ 1.18
CACNA1AO00555 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.4■■□□□ 1.18
CACNA1AO00555 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.4■■□□□ 1.18
CACNA1AO00555 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CACNA1AO00555 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.4■■□□□ 1.18
CACNA1AO00555 BX842568.3-201ENST00000418104 571 ntBASIC22.39■■□□□ 1.18
CACNA1AO00555 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.39■■□□□ 1.18
CACNA1AO00555 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CACNA1AO00555 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CACNA1AO00555 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC22.39■■□□□ 1.17
CACNA1AO00555 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CACNA1AO00555 KRT18P14-201ENST00000534205 1250 ntBASIC22.39■■□□□ 1.17
CACNA1AO00555 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.39■■□□□ 1.17
CACNA1AO00555 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.38■■□□□ 1.17
CACNA1AO00555 AL109923.1-201ENST00000618799 583 ntBASIC22.38■■□□□ 1.17
CACNA1AO00555 ABCB10P3-201ENST00000561950 2166 ntBASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 152.1 ms