Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CBX4O00257 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CBX4O00257 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CBX4O00257 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CBX4O00257 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CBX4O00257 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CBX4O00257 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.76■■□□□ 1.39
CBX4O00257 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.76■■□□□ 1.39
CBX4O00257 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CBX4O00257 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.76■■□□□ 1.39
CBX4O00257 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.76■■□□□ 1.39
CBX4O00257 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CBX4O00257 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CBX4O00257 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CBX4O00257 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CBX4O00257 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CBX4O00257 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
CBX4O00257 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CBX4O00257 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CBX4O00257 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.74■■□□□ 1.39
CBX4O00257 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.74■■□□□ 1.39
CBX4O00257 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.74■■□□□ 1.39
CBX4O00257 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
CBX4O00257 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.74■■□□□ 1.39
CBX4O00257 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CBX4O00257 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CBX4O00257 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CBX4O00257 AC142381.3-201ENST00000568208 1670 ntBASIC23.73■■□□□ 1.39
CBX4O00257 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CBX4O00257 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.72■■□□□ 1.39
CBX4O00257 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 AC138932.3-201ENST00000567634 1902 ntBASIC23.72■■□□□ 1.39
CBX4O00257 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CBX4O00257 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CBX4O00257 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.71■■□□□ 1.39
CBX4O00257 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.71■■□□□ 1.39
CBX4O00257 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CBX4O00257 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.71■■□□□ 1.39
CBX4O00257 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
CBX4O00257 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.71■■□□□ 1.39
CBX4O00257 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CBX4O00257 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.71■■□□□ 1.39
CBX4O00257 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.71■■□□□ 1.39
CBX4O00257 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CBX4O00257 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CBX4O00257 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.7■■□□□ 1.38
CBX4O00257 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.7■■□□□ 1.38
CBX4O00257 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.7■■□□□ 1.38
CBX4O00257 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.7■■□□□ 1.38
CBX4O00257 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.7■■□□□ 1.38
CBX4O00257 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CBX4O00257 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CBX4O00257 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CBX4O00257 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CBX4O00257 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.69■■□□□ 1.38
CBX4O00257 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CBX4O00257 TSPY9P-201ENST00000440215 945 ntBASIC23.69■■□□□ 1.38
CBX4O00257 TSPY11P-201ENST00000442607 1045 ntBASIC23.69■■□□□ 1.38
CBX4O00257 AC092028.1-203ENST00000608262 953 ntBASIC23.69■■□□□ 1.38
CBX4O00257 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
CBX4O00257 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
CBX4O00257 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CBX4O00257 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.68■■□□□ 1.38
CBX4O00257 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CBX4O00257 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CBX4O00257 AP003733.4-201ENST00000623785 1697 ntBASIC23.68■■□□□ 1.38
CBX4O00257 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CBX4O00257 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.68■■□□□ 1.38
CBX4O00257 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CBX4O00257 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.67■■□□□ 1.38
CBX4O00257 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.67■■□□□ 1.38
CBX4O00257 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.67■■□□□ 1.38
CBX4O00257 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CBX4O00257 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CBX4O00257 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.67■■□□□ 1.38
CBX4O00257 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.67■■□□□ 1.38
CBX4O00257 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
CBX4O00257 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.66■■□□□ 1.38
CBX4O00257 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
CBX4O00257 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.66■■□□□ 1.38
CBX4O00257 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.66■■□□□ 1.38
CBX4O00257 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
CBX4O00257 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CBX4O00257 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.66■■□□□ 1.38
CBX4O00257 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CBX4O00257 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms