Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
TRAV17A0A0B4J275 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TRAV17A0A0B4J275 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 SRD5A1P1-201ENST00000442297 786 ntBASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV17A0A0B4J275 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV17A0A0B4J275 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.15■□□□□ 0.98
TRAV17A0A0B4J275 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAV17A0A0B4J275 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV17A0A0B4J275 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV17A0A0B4J275 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV17A0A0B4J275 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV17A0A0B4J275 AC005703.6-201ENST00000623265 1329 ntBASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 PBX2P1-201ENST00000493219 1291 ntBASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
TRAV17A0A0B4J275 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 AC106739.1-201ENST00000617035 715 ntBASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV17A0A0B4J275 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 AL121749.1-202ENST00000609313 2153 ntBASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV17A0A0B4J275 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
TRAV17A0A0B4J275 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 UNC93B3-201ENST00000308076 687 ntBASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV17A0A0B4J275 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV17A0A0B4J275 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 AL136162.1-201ENST00000607711 1078 ntBASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TRAV17A0A0B4J275 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV17A0A0B4J275 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV17A0A0B4J275 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.08■□□□□ 0.96
TRAV17A0A0B4J275 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.08■□□□□ 0.96
TRAV17A0A0B4J275 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.08■□□□□ 0.96
TRAV17A0A0B4J275 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms