Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 AC009299.2-201ENST00000482477 511 ntBASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV41A0A0B4J266 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
TRAV41A0A0B4J266 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
TRAV41A0A0B4J266 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV41A0A0B4J266 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
TRAV41A0A0B4J266 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV41A0A0B4J266 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV41A0A0B4J266 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV41A0A0B4J266 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAV41A0A0B4J266 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 AC137630.3-201ENST00000607245 391 ntBASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV41A0A0B4J266 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV41A0A0B4J266 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 HLA-L-211ENST00000482052 1765 ntBASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 KRT125P-201ENST00000546827 989 ntBASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 Z92544.1-202ENST00000571933 1220 ntBASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 AL035685.1-201ENST00000636663 812 ntBASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV41A0A0B4J266 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV41A0A0B4J266 AF131216.4-201ENST00000638924 1588 ntBASIC18.21■□□□□ 0.51
TRAV41A0A0B4J266 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV41A0A0B4J266 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.21■□□□□ 0.51
TRAV41A0A0B4J266 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRAV41A0A0B4J266 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.21■□□□□ 0.51
TRAV41A0A0B4J266 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV41A0A0B4J266 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 AC239859.2-201ENST00000444165 318 ntBASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV41A0A0B4J266 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.19■□□□□ 0.5
TRAV41A0A0B4J266 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms