Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AC004967.1-201ENST00000453589 447 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 HLA-V-204ENST00000476601 1289 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 HLA-J-203ENST00000494367 1087 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SNHG9-202ENST00000564014 471 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 LINC00628-201ENST00000628516 1289 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 FO538757.1-201ENST00000623083 1397 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 LINC01101-201ENST00000622953 1884 ntBASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 RPL37AP1-201ENST00000412502 279 ntBASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AC015910.1-201ENST00000579400 975 ntBASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 AC244517.3-201ENST00000616254 1235 ntBASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms