Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AC002056.1-201ENST00000395613 760 ntBASIC13.65□□□□□ -0.22
NKX3-1Q99801 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AC073389.1-201ENST00000595595 795 ntBASIC13.65□□□□□ -0.22
NKX3-1Q99801 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.65□□□□□ -0.22
NKX3-1Q99801 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 CICP4-201ENST00000447359 2812 ntBASIC13.65□□□□□ -0.22
NKX3-1Q99801 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 OR2I1P-210ENST00000642037 4691 ntBASIC13.65□□□□□ -0.22
NKX3-1Q99801 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
NKX3-1Q99801 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX3-1Q99801 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AC142381.1-201ENST00000426099 345 ntBASIC13.64□□□□□ -0.23
NKX3-1Q99801 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AC091812.2-201ENST00000619081 385 ntBASIC13.64□□□□□ -0.23
NKX3-1Q99801 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 SBF1P1-201ENST00000444527 5631 ntBASIC13.64□□□□□ -0.23
NKX3-1Q99801 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NKX3-1Q99801 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 FAM45BP-202ENST00000592932 1624 ntBASIC13.64□□□□□ -0.23
NKX3-1Q99801 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX3-1Q99801 CICP11-201ENST00000434745 2827 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC005912.2-201ENST00000619492 2400 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms