Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC084262.1-201ENST00000567818 751 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 MIR3677-201ENST00000578964 60 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC13.28□□□□□ -0.28
COL12A1Q99715 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.28□□□□□ -0.28
COL12A1Q99715 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.28
COL12A1Q99715 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
COL12A1Q99715 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 GCSHP3-201ENST00000431120 391 ntBASIC13.27□□□□□ -0.28
COL12A1Q99715 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC13.27□□□□□ -0.28
COL12A1Q99715 HLA-J-204ENST00000495278 958 ntBASIC13.27□□□□□ -0.28
COL12A1Q99715 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC13.27□□□□□ -0.28
COL12A1Q99715 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC13.27□□□□□ -0.28
COL12A1Q99715 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC13.27□□□□□ -0.28
COL12A1Q99715 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.27□□□□□ -0.28
COL12A1Q99715 AC009955.4-201ENST00000597192 544 ntBASIC13.27□□□□□ -0.28
COL12A1Q99715 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.27□□□□□ -0.28
COL12A1Q99715 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL12A1Q99715 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
COL12A1Q99715 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
COL12A1Q99715 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.27□□□□□ -0.29
COL12A1Q99715 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC13.27□□□□□ -0.29
COL12A1Q99715 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC13.27□□□□□ -0.29
COL12A1Q99715 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
COL12A1Q99715 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
COL12A1Q99715 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.27□□□□□ -0.29
COL12A1Q99715 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL12A1Q99715 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 AL109809.1-201ENST00000418979 1367 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL12A1Q99715 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.26□□□□□ -0.29
COL12A1Q99715 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 MIR6125-201ENST00000618986 96 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 AL136295.7-201ENST00000619226 1200 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 FAM58BP-201ENST00000439056 645 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 AC004837.1-201ENST00000446267 564 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 AC106820.3-201ENST00000561653 397 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms