Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC15□□□□□ -0.01
VPS13AQ96RL7 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 CLUHP2-201ENST00000426660 1303 ntBASIC15□□□□□ -0.01
VPS13AQ96RL7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
VPS13AQ96RL7 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13AQ96RL7 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 UROS-201ENST00000368774 744 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC004522.1-201ENST00000419978 654 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC024293.1-201ENST00000467930 498 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 MRPL22P1-201ENST00000505398 616 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 NUDT4P2-201ENST00000578341 546 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC008805.1-201ENST00000590892 364 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AL157813.1-201ENST00000612996 587 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC006449.6-201ENST00000612330 2296 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC012073.1-201ENST00000606114 1108 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC084781.1-201ENST00000613737 656 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AL136295.7-201ENST00000619226 1200 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AL645728.2-202ENST00000641679 227 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AC144522.1-201ENST00000625111 1658 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 LINC01165-201ENST00000445190 1623 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 CICP11-201ENST00000434745 2827 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AL627230.2-201ENST00000613254 655 ntBASIC14.99□□□□□ -0.01
VPS13AQ96RL7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS13AQ96RL7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 AL627231.1-201ENST00000394467 1125 ntBASIC14.98□□□□□ -0.01
VPS13AQ96RL7 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 CR383656.3-201ENST00000551315 183 ntBASIC14.98□□□□□ -0.01
VPS13AQ96RL7 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 AC018695.6-201ENST00000614011 534 ntBASIC14.98□□□□□ -0.01
VPS13AQ96RL7 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 AC090502.4-201ENST00000551714 1386 ntBASIC14.98□□□□□ -0.01
VPS13AQ96RL7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS13AQ96RL7 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AC107464.3-201ENST00000609172 737 ntBASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PTPN20CP-201ENST00000614090 920 ntBASIC14.97□□□□□ -0.01
VPS13AQ96RL7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AC055811.4-201ENST00000624039 1754 ntBASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms