Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AC144831.1-201ENST00000573312 2656 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 AC098850.1-201ENST00000419919 790 ntBASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 RN7SL692P-201ENST00000464677 288 ntBASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 AC015910.1-201ENST00000579400 975 ntBASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 DBET-201ENST00000630918 3363 ntBASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTCHD1Q96NR3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 WASH4P-201ENST00000564273 1246 ntBASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 TMEM261P1-201ENST00000604899 340 ntBASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms