Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 AC005237.2-201ENST00000434368 219 ntBASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 PGAM5P1-201ENST00000518923 814 ntBASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 AC005829.1-201ENST00000570002 483 ntBASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC54Q8NEL0 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AZGP1P1-201ENST00000411909 902 ntBASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 KRT18P32-201ENST00000424695 1287 ntBASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AC007967.4-201ENST00000614700 386 ntBASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AL607033.1-201ENST00000623900 1599 ntBASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms