Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
NUDCD3Q8IVD9 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 CICP4-201ENST00000447359 2812 ntBASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 EEF1DP4-201ENST00000446006 880 ntBASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AC074386.1-202ENST00000463561 864 ntBASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 HNRNPUP1-201ENST00000554987 333 ntBASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AP002472.1-201ENST00000577490 586 ntBASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AC027307.2-201ENST00000591252 911 ntBASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.51■□□□□ 0.07
NUDCD3Q8IVD9 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 ACE3P-201ENST00000423435 1973 ntBASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 AC112191.1-201ENST00000523689 701 ntBASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 Z83851.2-201ENST00000609564 659 ntBASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 AL691432.3-201ENST00000621860 400 ntBASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 CICP11-201ENST00000434745 2827 ntBASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NUDCD3Q8IVD9 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NUDCD3Q8IVD9 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.49■□□□□ 0.07
NUDCD3Q8IVD9 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.49■□□□□ 0.07
NUDCD3Q8IVD9 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.49■□□□□ 0.07
NUDCD3Q8IVD9 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms