Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 MIR33B-201ENST00000385104 96 ntBASIC15□□□□□ -0.01
COL28A1Q2UY09 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 RN7SL769P-201ENST00000469386 295 ntBASIC15□□□□□ -0.01
COL28A1Q2UY09 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 AL359711.2-201ENST00000563105 872 ntBASIC15□□□□□ -0.01
COL28A1Q2UY09 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15□□□□□ -0.01
COL28A1Q2UY09 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15□□□□□ -0.01
COL28A1Q2UY09 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15□□□□□ -0.01
COL28A1Q2UY09 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15□□□□□ -0.01
COL28A1Q2UY09 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15□□□□□ -0.01
COL28A1Q2UY09 HADH-212ENST00000638621 741 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL28A1Q2UY09 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15□□□□□ -0.01
COL28A1Q2UY09 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
COL28A1Q2UY09 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 RPL17P11-201ENST00000417593 544 ntBASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC093724.1-201ENST00000448659 1027 ntBASIC14.99□□□□□ -0.01
COL28A1Q2UY09 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC020914.3-201ENST00000594712 304 ntBASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC005702.4-201ENST00000618393 416 ntBASIC14.99□□□□□ -0.01
COL28A1Q2UY09 AC008687.7-202ENST00000637404 953 ntBASIC14.99□□□□□ -0.01
COL28A1Q2UY09 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL28A1Q2UY09 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms