Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.31■□□□□ 0.52
BRCA1P38398 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
BRCA1P38398 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC18.31■□□□□ 0.52
BRCA1P38398 BCAS2P2-201ENST00000425064 674 ntBASIC18.31■□□□□ 0.52
BRCA1P38398 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC18.31■□□□□ 0.52
BRCA1P38398 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.31■□□□□ 0.52
BRCA1P38398 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
BRCA1P38398 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 MIR3180-2-201ENST00000581748 88 ntBASIC18.31■□□□□ 0.52
BRCA1P38398 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.3■□□□□ 0.52
BRCA1P38398 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCA1P38398 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
BRCA1P38398 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCA1P38398 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC18.3■□□□□ 0.52
BRCA1P38398 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCA1P38398 AC024293.1-201ENST00000467930 498 ntBASIC18.3■□□□□ 0.52
BRCA1P38398 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.3■□□□□ 0.52
BRCA1P38398 AC093752.3-201ENST00000567343 901 ntBASIC18.3■□□□□ 0.52
BRCA1P38398 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC18.3■□□□□ 0.52
BRCA1P38398 AC009884.2-201ENST00000603110 324 ntBASIC18.3■□□□□ 0.52
BRCA1P38398 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCA1P38398 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC18.3■□□□□ 0.52
BRCA1P38398 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
BRCA1P38398 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.3■□□□□ 0.52
BRCA1P38398 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BRCA1P38398 AC144522.1-201ENST00000625111 1658 ntBASIC18.3■□□□□ 0.52
BRCA1P38398 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC18.3■□□□□ 0.52
BRCA1P38398 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCA1P38398 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCA1P38398 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.29■□□□□ 0.52
BRCA1P38398 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
BRCA1P38398 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.29■□□□□ 0.52
BRCA1P38398 LINC01783-202ENST00000614408 828 ntBASIC18.29■□□□□ 0.52
BRCA1P38398 MIR6769A-201ENST00000617340 73 ntBASIC18.29■□□□□ 0.52
BRCA1P38398 BX284668.2-205ENST00000619677 828 ntBASIC18.29■□□□□ 0.52
BRCA1P38398 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
BRCA1P38398 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCA1P38398 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
BRCA1P38398 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.29■□□□□ 0.52
BRCA1P38398 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCA1P38398 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCA1P38398 AL354861.1-201ENST00000445213 355 ntBASIC18.29■□□□□ 0.52
BRCA1P38398 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
BRCA1P38398 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.29■□□□□ 0.52
BRCA1P38398 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCA1P38398 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.29■□□□□ 0.52
BRCA1P38398 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCA1P38398 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
BRCA1P38398 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms