Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A1P02462 AC005324.6-201ENST00000587972 613 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.57■□□□□ 0.56
COL4A1P02462 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 REXO1L2P-201ENST00000425429 2069 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 HINT2P1-201ENST00000419438 481 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 PDIA3P2-201ENST00000428073 158 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 VDAC1P1-201ENST00000439229 848 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.57■□□□□ 0.56
COL4A1P02462 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
COL4A1P02462 MARK2P5-201ENST00000507649 634 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 AC024681.1-201ENST00000521917 487 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.57■□□□□ 0.56
COL4A1P02462 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 MIR4706-201ENST00000582134 82 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 NAT9-222ENST00000583476 583 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A1P02462 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A1P02462 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
COL4A1P02462 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 Z98259.2-201ENST00000641583 609 ntBASIC18.57■□□□□ 0.56
COL4A1P02462 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A1P02462 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A1P02462 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A1P02462 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 AC092506.1-202ENST00000401022 528 ntBASIC18.56■□□□□ 0.56
COL4A1P02462 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 AC007274.2-201ENST00000421675 662 ntBASIC18.56■□□□□ 0.56
COL4A1P02462 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.56■□□□□ 0.56
COL4A1P02462 AP000346.4-201ENST00000614827 381 ntBASIC18.56■□□□□ 0.56
COL4A1P02462 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A1P02462 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A1P02462 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
COL4A1P02462 AC023090.2-201ENST00000625182 2110 ntBASIC18.55■□□□□ 0.56
COL4A1P02462 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A1P02462 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A1P02462 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.55■□□□□ 0.56
COL4A1P02462 AL596276.2-201ENST00000447525 331 ntBASIC18.55■□□□□ 0.56
COL4A1P02462 AC134698.3-201ENST00000523880 214 ntBASIC18.55■□□□□ 0.56
COL4A1P02462 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A1P02462 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A1P02462 AC018635.2-201ENST00000608625 364 ntBASIC18.55■□□□□ 0.56
COL4A1P02462 MEG3_2.1-201ENST00000611456 105 ntBASIC18.55■□□□□ 0.56
COL4A1P02462 AC091544.8-201ENST00000619490 361 ntBASIC18.55■□□□□ 0.56
COL4A1P02462 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A1P02462 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms