Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 AL590627.1-203ENST00000421194 1026 ntBASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 INTS4P1-203ENST00000641008 3683 ntBASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TPM4P1-201ENST00000436100 807 ntBASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TIMM8BP1-201ENST00000452384 211 ntBASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 RARRES2P9-201ENST00000565168 469 ntBASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 FAM197Y3-203ENST00000618346 717 ntBASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms