Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AL450487.1-201ENST00000426799 995 ntBASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AC079776.4-201ENST00000511039 504 ntBASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AC018845.2-201ENST00000568326 409 ntBASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 Z83851.2-201ENST00000609564 659 ntBASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 AC232323.1-201ENST00000540724 2099 ntBASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 REXO1L5P-201ENST00000622260 2098 ntBASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.51□□□□□ -0.25
CHMP1AQ9HD42 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 AL031595.1-201ENST00000623969 4709 ntBASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 AC092127.1-201ENST00000567093 3455 ntBASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 MIR193BHG-211ENST00000641433 5365 ntBASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 DMBT1P1-203ENST00000636837 4628 ntBASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.5□□□□□ -0.25
CHMP1AQ9HD42 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 IGHV3-22-201ENST00000520721 359 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms