Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGCS2P54868 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 AP003171.2-201ENST00000528208 925 ntBASIC17.78■□□□□ 0.44
HMGCS2P54868 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGCS2P54868 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.78■□□□□ 0.44
HMGCS2P54868 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGCS2P54868 RN7SL713P-201ENST00000582127 302 ntBASIC17.78■□□□□ 0.44
HMGCS2P54868 AC007663.3-201ENST00000609632 465 ntBASIC17.78■□□□□ 0.44
HMGCS2P54868 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.78■□□□□ 0.44
HMGCS2P54868 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGCS2P54868 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
HMGCS2P54868 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGCS2P54868 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGCS2P54868 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HMGCS2P54868 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 KRT8P4-201ENST00000509735 1454 ntBASIC17.77■□□□□ 0.44
HMGCS2P54868 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGCS2P54868 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.77■□□□□ 0.44
HMGCS2P54868 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGCS2P54868 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGCS2P54868 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGCS2P54868 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGCS2P54868 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.77■□□□□ 0.44
HMGCS2P54868 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
HMGCS2P54868 AL391280.1-201ENST00000506969 1062 ntBASIC17.77■□□□□ 0.44
HMGCS2P54868 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 SAMD11P1-201ENST00000571429 661 ntBASIC17.77■□□□□ 0.44
HMGCS2P54868 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGCS2P54868 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGCS2P54868 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGCS2P54868 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HMGCS2P54868 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.77■□□□□ 0.43
HMGCS2P54868 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGCS2P54868 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
HMGCS2P54868 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 AC006449.5-201ENST00000610658 2098 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HMGCS2P54868 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGCS2P54868 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGCS2P54868 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HMGCS2P54868 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HMGCS2P54868 ELK2AP-201ENST00000392510 1007 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 AL662890.1-201ENST00000396818 632 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGCS2P54868 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGCS2P54868 EIF4HP1-201ENST00000453115 687 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 AC022616.1-201ENST00000518688 554 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 AC044849.1-201ENST00000519737 1188 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGCS2P54868 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGCS2P54868 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGCS2P54868 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 NDUFV2P1-201ENST00000596415 907 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HMGCS2P54868 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGCS2P54868 AC092127.1-201ENST00000567093 3455 ntBASIC17.76■□□□□ 0.43
HMGCS2P54868 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
HMGCS2P54868 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms