Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 MIR346-201ENST00000362234 95 ntBASIC15.8■□□□□ 0.12
RPA3P35244 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 SLC25A39P2-201ENST00000537614 270 ntBASIC15.8■□□□□ 0.12
RPA3P35244 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.8■□□□□ 0.12
RPA3P35244 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.8■□□□□ 0.12
RPA3P35244 CICP14-201ENST00000629111 2732 ntBASIC15.8■□□□□ 0.12
RPA3P35244 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RPA3P35244 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.8■□□□□ 0.12
RPA3P35244 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.79■□□□□ 0.12
RPA3P35244 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.79■□□□□ 0.12
RPA3P35244 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RPA3P35244 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RPA3P35244 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 AC142381.1-201ENST00000426099 345 ntBASIC15.79■□□□□ 0.12
RPA3P35244 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
RPA3P35244 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.79■□□□□ 0.12
RPA3P35244 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.79■□□□□ 0.12
RPA3P35244 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.79■□□□□ 0.12
RPA3P35244 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.79■□□□□ 0.12
RPA3P35244 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
RPA3P35244 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RPA3P35244 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.78■□□□□ 0.12
RPA3P35244 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.78■□□□□ 0.12
RPA3P35244 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.78■□□□□ 0.12
RPA3P35244 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.78■□□□□ 0.12
RPA3P35244 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RPA3P35244 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
RPA3P35244 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RPA3P35244 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RPA3P35244 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.78■□□□□ 0.12
RPA3P35244 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms