Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC14.62□□□□□ -0.07
COL5A1P20908 AC092978.1-202ENST00000637590 1327 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.61□□□□□ -0.07
COL5A1P20908 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
COL5A1P20908 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 RN7SL181P-201ENST00000462921 277 ntBASIC14.61□□□□□ -0.07
COL5A1P20908 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC14.61□□□□□ -0.07
COL5A1P20908 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL5A1P20908 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
COL5A1P20908 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.61□□□□□ -0.07
COL5A1P20908 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.61□□□□□ -0.07
COL5A1P20908 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.61□□□□□ -0.07
COL5A1P20908 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.61□□□□□ -0.07
COL5A1P20908 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 AL353726.2-201ENST00000623259 884 ntBASIC14.61□□□□□ -0.07
COL5A1P20908 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL5A1P20908 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.61□□□□□ -0.07
COL5A1P20908 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.61□□□□□ -0.07
COL5A1P20908 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.6□□□□□ -0.07
COL5A1P20908 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
COL5A1P20908 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.6□□□□□ -0.07
COL5A1P20908 CEP164P1-201ENST00000455142 418 ntBASIC14.6□□□□□ -0.07
COL5A1P20908 AC021723.1-201ENST00000486306 515 ntBASIC14.6□□□□□ -0.07
COL5A1P20908 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.6□□□□□ -0.07
COL5A1P20908 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.6□□□□□ -0.07
COL5A1P20908 AC009779.1-201ENST00000551138 283 ntBASIC14.6□□□□□ -0.07
COL5A1P20908 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC14.6□□□□□ -0.07
COL5A1P20908 MIR4683-201ENST00000579659 81 ntBASIC14.6□□□□□ -0.07
COL5A1P20908 AP003419.4-201ENST00000616071 517 ntBASIC14.6□□□□□ -0.07
COL5A1P20908 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
COL5A1P20908 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.6□□□□□ -0.07
COL5A1P20908 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.6□□□□□ -0.07
COL5A1P20908 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.6□□□□□ -0.07
COL5A1P20908 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.6□□□□□ -0.07
COL5A1P20908 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL5A1P20908 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.59□□□□□ -0.07
COL5A1P20908 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 TUBB8P8-201ENST00000458717 1058 ntBASIC14.59□□□□□ -0.07
COL5A1P20908 HLA-J-204ENST00000495278 958 ntBASIC14.59□□□□□ -0.07
COL5A1P20908 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
COL5A1P20908 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.59□□□□□ -0.07
COL5A1P20908 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.59□□□□□ -0.07
COL5A1P20908 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.59□□□□□ -0.07
COL5A1P20908 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms