Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC15.88■□□□□ 0.13
COL9A1P20849 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC15.88■□□□□ 0.13
COL9A1P20849 AC116345.2-201ENST00000512837 523 ntBASIC15.88■□□□□ 0.13
COL9A1P20849 ZNF331-218ENST00000513265 739 ntTSL 3 BASIC15.88■□□□□ 0.13
COL9A1P20849 RNA5SP486-201ENST00000515961 83 ntBASIC15.88■□□□□ 0.13
COL9A1P20849 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC15.88■□□□□ 0.13
COL9A1P20849 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.88■□□□□ 0.13
COL9A1P20849 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 HMGB1P8-201ENST00000558211 949 ntBASIC15.88■□□□□ 0.13
COL9A1P20849 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC15.88■□□□□ 0.13
COL9A1P20849 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC15.88■□□□□ 0.13
COL9A1P20849 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC15.88■□□□□ 0.13
COL9A1P20849 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 AC011247.3-201ENST00000603297 438 ntBASIC15.88■□□□□ 0.13
COL9A1P20849 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.88■□□□□ 0.13
COL9A1P20849 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.88■□□□□ 0.13
COL9A1P20849 AC074138.1-201ENST00000611182 1303 ntBASIC15.88■□□□□ 0.13
COL9A1P20849 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.88■□□□□ 0.13
COL9A1P20849 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.87■□□□□ 0.13
COL9A1P20849 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
COL9A1P20849 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.87■□□□□ 0.13
COL9A1P20849 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
COL9A1P20849 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL9A1P20849 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL9A1P20849 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.87■□□□□ 0.13
COL9A1P20849 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC15.87■□□□□ 0.13
COL9A1P20849 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC15.87■□□□□ 0.13
COL9A1P20849 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
COL9A1P20849 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
COL9A1P20849 AP001442.1-203ENST00000596385 876 ntTSL 5 BASIC15.87■□□□□ 0.13
COL9A1P20849 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.87■□□□□ 0.13
COL9A1P20849 AC103810.10-201ENST00000606504 343 ntBASIC15.87■□□□□ 0.13
COL9A1P20849 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.87■□□□□ 0.13
COL9A1P20849 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.87■□□□□ 0.13
COL9A1P20849 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC15.87■□□□□ 0.13
COL9A1P20849 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 AL121723.1-201ENST00000445194 1519 ntBASIC15.87■□□□□ 0.13
COL9A1P20849 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL9A1P20849 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL9A1P20849 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.87■□□□□ 0.13
COL9A1P20849 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 AC006449.6-201ENST00000612330 2296 ntBASIC15.87■□□□□ 0.13
COL9A1P20849 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.87■□□□□ 0.13
COL9A1P20849 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.87■□□□□ 0.13
COL9A1P20849 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL9A1P20849 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL9A1P20849 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL9A1P20849 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL9A1P20849 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
COL9A1P20849 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.86■□□□□ 0.13
COL9A1P20849 NHP2-202ENST00000314397 599 ntTSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.86■□□□□ 0.13
COL9A1P20849 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 CD8B2-202ENST00000417670 633 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 CNN2P10-201ENST00000443067 918 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC15.86■□□□□ 0.13
COL9A1P20849 ALG1L6P-201ENST00000515248 758 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL9A1P20849 AC103988.2-201ENST00000561804 725 ntBASIC15.86■□□□□ 0.13
COL9A1P20849 AL031713.1-201ENST00000564813 661 ntBASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms