Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.96■□□□□ 0.47
CTDNEP1O95476 AL662799.1-202ENST00000614205 422 ntBASIC17.96■□□□□ 0.47
CTDNEP1O95476 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTDNEP1O95476 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.96■□□□□ 0.47
CTDNEP1O95476 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTDNEP1O95476 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTDNEP1O95476 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTDNEP1O95476 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
CTDNEP1O95476 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.96■□□□□ 0.47
CTDNEP1O95476 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTDNEP1O95476 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.96■□□□□ 0.47
CTDNEP1O95476 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CTDNEP1O95476 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 BASP1P1-201ENST00000430708 665 ntBASIC17.95■□□□□ 0.46
CTDNEP1O95476 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.95■□□□□ 0.46
CTDNEP1O95476 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTDNEP1O95476 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CTDNEP1O95476 AL513477.1-201ENST00000602865 2407 ntBASIC17.94■□□□□ 0.46
CTDNEP1O95476 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 DOC2GP-202ENST00000514950 1163 ntBASIC17.94■□□□□ 0.46
CTDNEP1O95476 RARRES2P5-201ENST00000564013 466 ntBASIC17.94■□□□□ 0.46
CTDNEP1O95476 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTDNEP1O95476 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CTDNEP1O95476 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 DRD5P1-201ENST00000456605 1438 ntBASIC17.93■□□□□ 0.46
CTDNEP1O95476 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms