Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.98□□□□□ -0.01
SEMA3DO95025 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.98□□□□□ -0.01
SEMA3DO95025 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.98□□□□□ -0.01
SEMA3DO95025 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.98□□□□□ -0.01
SEMA3DO95025 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.98□□□□□ -0.01
SEMA3DO95025 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
SEMA3DO95025 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.98□□□□□ -0.01
SEMA3DO95025 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SEMA3DO95025 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 AC023157.3-201ENST00000619086 2088 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.97□□□□□ -0.01
SEMA3DO95025 AC126365.1-201ENST00000578585 1514 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SEMA3DO95025 KRT18P28-201ENST00000453838 1332 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SEMA3DO95025 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SEMA3DO95025 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 C18orf15-201ENST00000623680 2534 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 AC006486.2-201ENST00000624246 2199 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.97□□□□□ -0.01
SEMA3DO95025 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
SEMA3DO95025 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 RPL13P2-201ENST00000440687 659 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.97□□□□□ -0.01
SEMA3DO95025 SDHAP3-202ENST00000515467 728 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.97□□□□□ -0.01
SEMA3DO95025 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.97□□□□□ -0.01
SEMA3DO95025 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.97□□□□□ -0.01
SEMA3DO95025 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.97□□□□□ -0.01
SEMA3DO95025 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
SEMA3DO95025 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SEMA3DO95025 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SEMA3DO95025 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SEMA3DO95025 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SEMA3DO95025 KRT8P44-201ENST00000441609 1350 ntBASIC14.97□□□□□ -0.01
SEMA3DO95025 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SEMA3DO95025 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.96□□□□□ -0.01
SEMA3DO95025 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.96□□□□□ -0.01
SEMA3DO95025 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 AL161772.1-201ENST00000610494 4412 ntBASIC14.96□□□□□ -0.01
SEMA3DO95025 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SEMA3DO95025 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SEMA3DO95025 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
SEMA3DO95025 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SEMA3DO95025 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms