Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 ACTBP11-201ENST00000436287 1126 ntBASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AL355864.2-201ENST00000447420 863 ntBASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 VDAC1P7-201ENST00000462417 847 ntBASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CSF2RBP1-201ENST00000447905 391 ntBASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 FAM8A2P-201ENST00000528813 1142 ntBASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 HNRNPUP1-201ENST00000554987 333 ntBASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 RN7SL219P-201ENST00000582872 296 ntBASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TM9SF3Q9HD45 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TM9SF3Q9HD45 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms