Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 AC090502.4-201ENST00000551714 1386 ntBASIC13.31□□□□□ -0.28
COL12A1Q99715 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
COL12A1Q99715 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC13.31□□□□□ -0.28
COL12A1Q99715 HMGB1P24-201ENST00000611897 328 ntBASIC13.31□□□□□ -0.28
COL12A1Q99715 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.31□□□□□ -0.28
COL12A1Q99715 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 REXO1L2P-201ENST00000425429 2069 ntBASIC13.31□□□□□ -0.28
COL12A1Q99715 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL12A1Q99715 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL12A1Q99715 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC13.31□□□□□ -0.28
COL12A1Q99715 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.31□□□□□ -0.28
COL12A1Q99715 AP003398.1-201ENST00000531124 318 ntBASIC13.31□□□□□ -0.28
COL12A1Q99715 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.31□□□□□ -0.28
COL12A1Q99715 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.31□□□□□ -0.28
COL12A1Q99715 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 SNORD3B-2-202ENST00000571722 791 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 AL358472.3-201ENST00000608147 415 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.3□□□□□ -0.28
COL12A1Q99715 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 AL137077.2-201ENST00000635124 1608 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 BX323043.1-201ENST00000641006 1765 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 HIST2H2BA-201ENST00000412169 381 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 LINC00634-202ENST00000505157 222 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.3□□□□□ -0.28
COL12A1Q99715 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.3□□□□□ -0.28
COL12A1Q99715 MBP-238ENST00000580402 915 ntTSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 KRT8P14-201ENST00000414254 1442 ntBASIC13.3□□□□□ -0.28
COL12A1Q99715 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.3□□□□□ -0.28
COL12A1Q99715 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
COL12A1Q99715 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL12A1Q99715 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL12A1Q99715 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 REXO1L5P-201ENST00000622260 2098 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms