Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 UXT-AS1-201ENST00000590504 1525 ntBASIC16.87■□□□□ 0.29
CCDC42Q96M95 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 AC007191.1-201ENST00000623179 2995 ntBASIC16.87■□□□□ 0.29
CCDC42Q96M95 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 WASH3P-207ENST00000560956 1394 ntBASIC16.87■□□□□ 0.29
CCDC42Q96M95 FO538757.1-201ENST00000623083 1397 ntBASIC16.87■□□□□ 0.29
CCDC42Q96M95 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CCDC42Q96M95 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC42Q96M95 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 AC106730.1-201ENST00000566722 1090 ntBASIC16.86■□□□□ 0.29
CCDC42Q96M95 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SBF1P1-201ENST00000444527 5631 ntBASIC16.86■□□□□ 0.29
CCDC42Q96M95 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC42Q96M95 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC42Q96M95 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
CCDC42Q96M95 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms