Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 CTBP2P8-201ENST00000422584 1330 ntBASIC15.39■□□□□ 0.05
TTC28Q96AY4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC15.39■□□□□ 0.05
TTC28Q96AY4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TTC28Q96AY4 FKBP4P6-201ENST00000457486 1332 ntBASIC15.39■□□□□ 0.05
TTC28Q96AY4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 MIR1301-201ENST00000408518 82 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 BANF1P3-201ENST00000412556 261 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 HLA-DQB1-202ENST00000399079 1501 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PP12613-201ENST00000424958 2230 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AL451000.1-201ENST00000451300 1186 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AC100827.2-201ENST00000563214 1194 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 EEF1DP7-201ENST00000580496 513 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AC002044.2-201ENST00000624910 970 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TTC28Q96AY4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.38■□□□□ 0.05
TTC28Q96AY4 AC022188.1-201ENST00000620960 1664 ntBASIC15.38■□□□□ 0.05
TTC28Q96AY4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 AC098657.1-201ENST00000416270 1135 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 MAGEA7P-201ENST00000436482 942 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 AC002472.3-201ENST00000640124 621 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms