Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.27■□□□□ 0.36
HPS3Q969F9 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS3Q969F9 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.27■□□□□ 0.36
HPS3Q969F9 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
HPS3Q969F9 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.27■□□□□ 0.36
HPS3Q969F9 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
HPS3Q969F9 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HPS3Q969F9 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HPS3Q969F9 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
HPS3Q969F9 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HPS3Q969F9 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HPS3Q969F9 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.26■□□□□ 0.35
HPS3Q969F9 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 TOMM22P5-201ENST00000416399 439 ntBASIC17.26■□□□□ 0.35
HPS3Q969F9 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS3Q969F9 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS3Q969F9 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS3Q969F9 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
HPS3Q969F9 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 AC104794.3-201ENST00000566840 1248 ntBASIC17.26■□□□□ 0.35
HPS3Q969F9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.26■□□□□ 0.35
HPS3Q969F9 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS3Q969F9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HPS3Q969F9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS3Q969F9 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS3Q969F9 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS3Q969F9 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.25■□□□□ 0.35
HPS3Q969F9 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.25■□□□□ 0.35
HPS3Q969F9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.25■□□□□ 0.35
HPS3Q969F9 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.25■□□□□ 0.35
HPS3Q969F9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS3Q969F9 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.25■□□□□ 0.35
HPS3Q969F9 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HPS3Q969F9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HPS3Q969F9 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS3Q969F9 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS3Q969F9 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS3Q969F9 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS3Q969F9 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS3Q969F9 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms