Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 AC007292.2-201ENST00000593524 1812 ntBASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 MROH4P-201ENST00000431302 1578 ntBASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 SPDYE17-201ENST00000412399 783 ntBASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 AP000347.1-202ENST00000435868 847 ntBASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 MTND6P24-201ENST00000440466 518 ntBASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.19■□□□□ 0.18
ATG4AQ8WYN0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AL390755.1-201ENST00000623716 2027 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 YBX1P5-201ENST00000509441 847 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AC026150.2-201ENST00000564693 1156 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 RN7SL828P-201ENST00000607615 303 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 AC232323.1-201ENST00000540724 2099 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 REXO1L5P-201ENST00000622260 2098 ntBASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms