Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.24■□□□□ 0.51
COL4A5P29400 AL109837.1-201ENST00000603272 613 ntBASIC18.24■□□□□ 0.51
COL4A5P29400 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL4A5P29400 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A5P29400 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A5P29400 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A5P29400 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A5P29400 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL4A5P29400 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A5P29400 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A5P29400 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A5P29400 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A5P29400 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
COL4A5P29400 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.23■□□□□ 0.51
COL4A5P29400 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.23■□□□□ 0.51
COL4A5P29400 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A5P29400 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A5P29400 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
COL4A5P29400 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A5P29400 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A5P29400 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.22■□□□□ 0.51
COL4A5P29400 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.22■□□□□ 0.51
COL4A5P29400 SCARNA21-201ENST00000517026 139 ntBASIC18.22■□□□□ 0.51
COL4A5P29400 IGHV3-37-201ENST00000518544 340 ntBASIC18.22■□□□□ 0.51
COL4A5P29400 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.22■□□□□ 0.51
COL4A5P29400 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 REXO1L4P-201ENST00000605109 1937 ntBASIC18.22■□□□□ 0.51
COL4A5P29400 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
COL4A5P29400 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 KRT8P21-201ENST00000430398 1491 ntBASIC18.22■□□□□ 0.51
COL4A5P29400 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.22■□□□□ 0.51
COL4A5P29400 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A5P29400 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A5P29400 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.22■□□□□ 0.51
COL4A5P29400 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A5P29400 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 AC136759.1-202ENST00000530858 2194 ntBASIC18.21■□□□□ 0.51
COL4A5P29400 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
COL4A5P29400 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms