Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
USF1P22415 AL162726.2-201ENST00000438986 1017 ntBASIC13.28□□□□□ -0.28
USF1P22415 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.28□□□□□ -0.28
USF1P22415 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.28□□□□□ -0.28
USF1P22415 AC104989.1-201ENST00000519711 778 ntBASIC13.28□□□□□ -0.28
USF1P22415 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.28□□□□□ -0.28
USF1P22415 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.28□□□□□ -0.28
USF1P22415 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.28□□□□□ -0.28
USF1P22415 BTNL10-201ENST00000595971 695 ntBASIC13.28□□□□□ -0.28
USF1P22415 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
USF1P22415 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
USF1P22415 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
USF1P22415 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
USF1P22415 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
USF1P22415 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
USF1P22415 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
USF1P22415 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 AC092850.2-201ENST00000623821 2697 ntBASIC13.27□□□□□ -0.28
USF1P22415 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.27□□□□□ -0.28
USF1P22415 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
USF1P22415 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
USF1P22415 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
USF1P22415 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.27□□□□□ -0.28
USF1P22415 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
USF1P22415 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
USF1P22415 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.27□□□□□ -0.29
USF1P22415 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.27□□□□□ -0.29
USF1P22415 AC245100.5-201ENST00000452108 331 ntBASIC13.27□□□□□ -0.29
USF1P22415 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.27□□□□□ -0.29
USF1P22415 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.27□□□□□ -0.29
USF1P22415 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.27□□□□□ -0.29
USF1P22415 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
USF1P22415 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.27□□□□□ -0.29
USF1P22415 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
USF1P22415 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.27□□□□□ -0.29
USF1P22415 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 KRT8P37-201ENST00000451609 1420 ntBASIC13.27□□□□□ -0.29
USF1P22415 KRT8P22-201ENST00000562317 1415 ntBASIC13.27□□□□□ -0.29
USF1P22415 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.27□□□□□ -0.29
USF1P22415 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.27□□□□□ -0.29
USF1P22415 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.27□□□□□ -0.29
USF1P22415 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.27□□□□□ -0.29
USF1P22415 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
USF1P22415 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms