Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.77□□□□□ -0.21
LMX1BO60663 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.77□□□□□ -0.21
LMX1BO60663 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.77□□□□□ -0.21
LMX1BO60663 AL008721.1-201ENST00000609964 604 ntBASIC13.77□□□□□ -0.21
LMX1BO60663 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
LMX1BO60663 AC073592.8-201ENST00000624126 511 ntBASIC13.77□□□□□ -0.21
LMX1BO60663 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.77□□□□□ -0.21
LMX1BO60663 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LMX1BO60663 LINC00528-201ENST00000600723 2160 ntBASIC13.76□□□□□ -0.21
LMX1BO60663 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 KRT8P44-201ENST00000441609 1350 ntBASIC13.76□□□□□ -0.21
LMX1BO60663 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LMX1BO60663 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 FAM220BP-201ENST00000377689 816 ntBASIC13.76□□□□□ -0.21
LMX1BO60663 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.76□□□□□ -0.21
LMX1BO60663 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 AC004890.2-204ENST00000481968 304 ntBASIC13.76□□□□□ -0.21
LMX1BO60663 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.76□□□□□ -0.21
LMX1BO60663 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 SERBP1P5-201ENST00000510079 1181 ntBASIC13.76□□□□□ -0.21
LMX1BO60663 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.76□□□□□ -0.21
LMX1BO60663 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.76□□□□□ -0.21
LMX1BO60663 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.76□□□□□ -0.21
LMX1BO60663 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.76□□□□□ -0.21
LMX1BO60663 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.76□□□□□ -0.21
LMX1BO60663 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 AC004233.3-201ENST00000607794 1269 ntBASIC13.76□□□□□ -0.21
LMX1BO60663 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
LMX1BO60663 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LMX1BO60663 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LMX1BO60663 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.76□□□□□ -0.21
LMX1BO60663 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.75□□□□□ -0.21
LMX1BO60663 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LMX1BO60663 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 AC007326.2-201ENST00000624224 7579 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 KRT8P37-201ENST00000451609 1420 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.75□□□□□ -0.21
LMX1BO60663 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 AGAP7P-201ENST00000582299 2062 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 AGAP14-201ENST00000624701 2060 ntBASIC13.75□□□□□ -0.21
LMX1BO60663 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LMX1BO60663 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LMX1BO60663 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LMX1BO60663 OR8S1-201ENST00000310194 1080 ntBASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms