Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC105339.1-204ENST00000636249 355 ntBASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AC041040.2-201ENST00000622926 2899 ntBASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC39Q9UFE4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AC069335.1-201ENST00000489972 472 ntBASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AC243562.2-201ENST00000561247 970 ntBASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AC084121.4-201ENST00000641598 221 ntBASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AF228730.8-201ENST00000642140 221 ntBASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 MROH4P-201ENST00000431302 1578 ntBASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AL137784.3-201ENST00000623858 2288 ntBASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC39Q9UFE4 AC105250.1-201ENST00000509378 2057 ntBASIC18.14■□□□□ 0.5
CCDC39Q9UFE4 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC18.14■□□□□ 0.5
CCDC39Q9UFE4 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
CCDC39Q9UFE4 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC18.14■□□□□ 0.5
CCDC39Q9UFE4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 BX842568.4-201ENST00000421222 227 ntBASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 YBX1P5-201ENST00000509441 847 ntBASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 SLC25A39P2-201ENST00000537614 270 ntBASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 MIR4469-201ENST00000583919 79 ntBASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 AC022145.2-201ENST00000598203 171 ntBASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 AC055717.3-201ENST00000622967 595 ntBASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC39Q9UFE4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms