Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AC068587.3-201ENST00000526613 355 ntBASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AC120045.2-201ENST00000567334 178 ntBASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 MIR4538-201ENST00000581377 78 ntBASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 AC134407.2-201ENST00000625089 1978 ntBASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.63■□□□□ 0.09
TM9SF3Q9HD45 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AL136379.1-201ENST00000623471 2642 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AC005229.1-201ENST00000392885 409 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 C1QBPP1-201ENST00000400117 770 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 HAUS4P1-201ENST00000406739 1145 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AC099336.1-201ENST00000417053 1171 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AP001889.1-201ENST00000525414 633 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AL583810.1-201ENST00000553344 1045 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AL450472.2-201ENST00000603663 1156 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 REXO1L1P-202ENST00000608646 1974 ntBASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.62■□□□□ 0.09
TM9SF3Q9HD45 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AC099063.4-201ENST00000641099 1602 ntBASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 TSPY26P-202ENST00000565928 3884 ntBASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 AC136604.1-201ENST00000418535 575 ntBASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.61■□□□□ 0.09
TM9SF3Q9HD45 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms