Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.89■□□□□ 0.3
CCDC42Q96M95 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC42Q96M95 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AC005089.1-201ENST00000619486 2241 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 RPL5P21-201ENST00000404620 815 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 AL590627.1-203ENST00000421194 1026 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 ADH5P3-201ENST00000433842 1137 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AC079140.1-201ENST00000508039 487 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 FAM197Y3-203ENST00000618346 717 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AP3S2-216ENST00000617003 1561 ntBASIC16.89■□□□□ 0.29
CCDC42Q96M95 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC42Q96M95 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC42Q96M95 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AZGP1P1-201ENST00000411909 902 ntBASIC16.88■□□□□ 0.29
CCDC42Q96M95 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 KRT8P48-201ENST00000515599 1220 ntBASIC16.88■□□□□ 0.29
CCDC42Q96M95 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC42Q96M95 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC42Q96M95 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms