Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL512652.2-201ENST00000625156 1716 ntBASIC16.79■□□□□ 0.28
LRCH3Q96II8 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SLED1-202ENST00000512051 380 ntBASIC16.79■□□□□ 0.28
LRCH3Q96II8 RTN3P1-201ENST00000536295 711 ntBASIC16.79■□□□□ 0.28
LRCH3Q96II8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 YRDCP1-201ENST00000621419 643 ntBASIC16.79■□□□□ 0.28
LRCH3Q96II8 AC006453.1-201ENST00000636037 1257 ntBASIC16.79■□□□□ 0.28
LRCH3Q96II8 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LRCH3Q96II8 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LRCH3Q96II8 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 U82695.1-201ENST00000635752 1889 ntBASIC16.78■□□□□ 0.28
LRCH3Q96II8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.78■□□□□ 0.28
LRCH3Q96II8 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 EEF1DP4-201ENST00000446006 880 ntBASIC16.78■□□□□ 0.28
LRCH3Q96II8 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 EIF5AP2-201ENST00000585668 1047 ntBASIC16.78■□□□□ 0.28
LRCH3Q96II8 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LRCH3Q96II8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LRCH3Q96II8 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
LRCH3Q96II8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.77■□□□□ 0.28
LRCH3Q96II8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 RNF216P1-203ENST00000404404 2427 ntBASIC16.77■□□□□ 0.28
LRCH3Q96II8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
LRCH3Q96II8 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.77■□□□□ 0.28
LRCH3Q96II8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.77■□□□□ 0.28
LRCH3Q96II8 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LRCH3Q96II8 AC092053.1-201ENST00000605787 1936 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms