Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 AC127383.1-201ENST00000444697 1800 ntBASIC14.06□□□□□ -0.16
CCDC58Q4VC31 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC58Q4VC31 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC005562.1-201ENST00000583030 3219 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC091951.1-201ENST00000512854 2465 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC140658.5-201ENST00000438532 169 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 FAM197Y8-203ENST00000450145 560 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC096734.2-201ENST00000562054 433 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC024267.1-201ENST00000582320 895 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AL691432.1-201ENST00000596308 1422 ntBASIC14.05□□□□□ -0.16
CCDC58Q4VC31 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC58Q4VC31 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 KRT18P67-201ENST00000432816 1264 ntBASIC14.04□□□□□ -0.16
CCDC58Q4VC31 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 RHOQP3-201ENST00000437982 621 ntBASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 MIR4313-201ENST00000580760 101 ntBASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AC007064.4-201ENST00000637740 555 ntBASIC14.04□□□□□ -0.16
CCDC58Q4VC31 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms