Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.23■□□□□ 0.51
RHBDL3P58872 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.23■□□□□ 0.51
RHBDL3P58872 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.23■□□□□ 0.51
RHBDL3P58872 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.23■□□□□ 0.51
RHBDL3P58872 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 AC005695.3-201ENST00000614522 232 ntBASIC18.23■□□□□ 0.51
RHBDL3P58872 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.23■□□□□ 0.51
RHBDL3P58872 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.23■□□□□ 0.51
RHBDL3P58872 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.23■□□□□ 0.51
RHBDL3P58872 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.23■□□□□ 0.51
RHBDL3P58872 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RHBDL3P58872 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 DOC2GP-204ENST00000639052 2548 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC18.22■□□□□ 0.51
RHBDL3P58872 AC007969.1-201ENST00000433675 447 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 AC245100.3-201ENST00000441281 285 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC18.22■□□□□ 0.51
RHBDL3P58872 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.22■□□□□ 0.51
RHBDL3P58872 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 AC022616.1-201ENST00000518688 554 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
RHBDL3P58872 DUX4L47-201ENST00000566374 394 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 MIR3615-201ENST00000581999 87 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 EEF1DP1-201ENST00000585891 896 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 AL118558.3-201ENST00000607414 1079 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.22■□□□□ 0.51
RHBDL3P58872 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.22■□□□□ 0.51
RHBDL3P58872 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
RHBDL3P58872 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RHBDL3P58872 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
RHBDL3P58872 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 AL354989.2-201ENST00000435838 1540 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 AL133338.1-201ENST00000565695 1517 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
RHBDL3P58872 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.22■□□□□ 0.51
RHBDL3P58872 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDL3P58872 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.22■□□□□ 0.51
RHBDL3P58872 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
RHBDL3P58872 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
RHBDL3P58872 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.21■□□□□ 0.51
RHBDL3P58872 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC18.21■□□□□ 0.51
RHBDL3P58872 AC006033.1-201ENST00000440505 426 ntBASIC18.21■□□□□ 0.51
RHBDL3P58872 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 AP006547.1-201ENST00000563435 692 ntBASIC18.21■□□□□ 0.51
RHBDL3P58872 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 AC004466.1-201ENST00000599515 1080 ntBASIC18.21■□□□□ 0.51
RHBDL3P58872 AC243960.2-201ENST00000600996 747 ntBASIC18.21■□□□□ 0.51
RHBDL3P58872 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDL3P58872 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.21■□□□□ 0.51
RHBDL3P58872 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.21■□□□□ 0.51
RHBDL3P58872 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms