Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH4P55283 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CDH4P55283 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.9■□□□□ 0.14
CDH4P55283 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CDH4P55283 AC011270.2-201ENST00000624293 2550 ntBASIC15.9■□□□□ 0.14
CDH4P55283 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH4P55283 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.9■□□□□ 0.14
CDH4P55283 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH4P55283 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH4P55283 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 AL138799.1-201ENST00000448213 1675 ntBASIC15.89■□□□□ 0.13
CDH4P55283 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.89■□□□□ 0.13
CDH4P55283 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 AC132938.2-201ENST00000579188 680 ntBASIC15.89■□□□□ 0.13
CDH4P55283 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.89■□□□□ 0.13
CDH4P55283 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 IGHV3-72-202ENST00000621503 303 ntBASIC15.89■□□□□ 0.13
CDH4P55283 AL591163.1-201ENST00000641757 987 ntBASIC15.89■□□□□ 0.13
CDH4P55283 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.89■□□□□ 0.13
CDH4P55283 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CDH4P55283 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDH4P55283 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CDH4P55283 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH4P55283 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
CDH4P55283 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH4P55283 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CDH4P55283 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.88■□□□□ 0.13
CDH4P55283 AC007389.4-201ENST00000454674 793 ntBASIC15.88■□□□□ 0.13
CDH4P55283 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.88■□□□□ 0.13
CDH4P55283 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 AC010319.3-201ENST00000597028 470 ntBASIC15.88■□□□□ 0.13
CDH4P55283 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 TMBIM7P-203ENST00000641617 1718 ntBASIC15.88■□□□□ 0.13
CDH4P55283 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CDH4P55283 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.88■□□□□ 0.13
CDH4P55283 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDH4P55283 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms