Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.13■□□□□ 0.65
COL5A3P25940 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL5A3P25940 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
COL5A3P25940 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL5A3P25940 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 FAM58BP-201ENST00000439056 645 ntBASIC19.13■□□□□ 0.65
COL5A3P25940 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC19.13■□□□□ 0.65
COL5A3P25940 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 RPL17P45-201ENST00000586289 509 ntBASIC19.13■□□□□ 0.65
COL5A3P25940 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC19.13■□□□□ 0.65
COL5A3P25940 COX6A1P2-201ENST00000620597 330 ntBASIC19.13■□□□□ 0.65
COL5A3P25940 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 TBC1D3J-201ENST00000620719 1426 ntBASIC19.13■□□□□ 0.65
COL5A3P25940 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A3P25940 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A3P25940 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 AC026316.1-201ENST00000398900 414 ntBASIC19.12■□□□□ 0.65
COL5A3P25940 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC19.12■□□□□ 0.65
COL5A3P25940 RN7SL163P-201ENST00000583100 276 ntBASIC19.12■□□□□ 0.65
COL5A3P25940 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC19.12■□□□□ 0.65
COL5A3P25940 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL5A3P25940 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL5A3P25940 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A3P25940 AC073352.2-201ENST00000609385 439 ntBASIC19.12■□□□□ 0.65
COL5A3P25940 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.12■□□□□ 0.65
COL5A3P25940 AC020910.5-201ENST00000623668 1865 ntBASIC19.12■□□□□ 0.65
COL5A3P25940 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
COL5A3P25940 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 PES1-204ENST00000402284 2144 ntTSL 5 BASIC19.12■□□□□ 0.65
COL5A3P25940 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
COL5A3P25940 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.12■□□□□ 0.65
COL5A3P25940 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
COL5A3P25940 AMT-239ENST00000636865 1914 ntTSL 5 BASIC19.12■□□□□ 0.65
COL5A3P25940 CYP2T1P-202ENST00000641596 2535 ntBASIC19.12■□□□□ 0.65
COL5A3P25940 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A3P25940 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
COL5A3P25940 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.11■□□□□ 0.65
COL5A3P25940 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 AL157407.1-201ENST00000435784 904 ntBASIC19.11■□□□□ 0.65
COL5A3P25940 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC19.11■□□□□ 0.65
COL5A3P25940 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC19.11■□□□□ 0.65
COL5A3P25940 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
COL5A3P25940 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC19.11■□□□□ 0.65
COL5A3P25940 MIR3147-201ENST00000577811 66 ntBASIC19.11■□□□□ 0.65
COL5A3P25940 NAP1L6-202ENST00000641404 1222 ntBASIC19.11■□□□□ 0.65
COL5A3P25940 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL5A3P25940 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
COL5A3P25940 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A3P25940 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.11■□□□□ 0.65
COL5A3P25940 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A3P25940 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.11■□□□□ 0.65
COL5A3P25940 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL5A3P25940 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A3P25940 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A3P25940 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A3P25940 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL5A3P25940 AC092127.1-201ENST00000567093 3455 ntBASIC19.11■□□□□ 0.65
COL5A3P25940 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL5A3P25940 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms