Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
MSH4O15457 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.43■□□□□ 0.38
MSH4O15457 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.43■□□□□ 0.38
MSH4O15457 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.43■□□□□ 0.38
MSH4O15457 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.43■□□□□ 0.38
MSH4O15457 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
MSH4O15457 AL645728.2-202ENST00000641679 227 ntBASIC17.43■□□□□ 0.38
MSH4O15457 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
MSH4O15457 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.43■□□□□ 0.38
MSH4O15457 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.43■□□□□ 0.38
MSH4O15457 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.43■□□□□ 0.38
MSH4O15457 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.43■□□□□ 0.38
MSH4O15457 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.42■□□□□ 0.38
MSH4O15457 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 MSTO2P-201ENST00000314835 1709 ntBASIC17.42■□□□□ 0.38
MSH4O15457 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
MSH4O15457 U91328.1-201ENST00000437528 223 ntBASIC17.42■□□□□ 0.38
MSH4O15457 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.42■□□□□ 0.38
MSH4O15457 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.42■□□□□ 0.38
MSH4O15457 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.42■□□□□ 0.38
MSH4O15457 AC093433.1-201ENST00000458048 571 ntBASIC17.42■□□□□ 0.38
MSH4O15457 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.42■□□□□ 0.38
MSH4O15457 AP001582.1-201ENST00000525856 295 ntBASIC17.42■□□□□ 0.38
MSH4O15457 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
MSH4O15457 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 AC008735.3-201ENST00000596646 500 ntBASIC17.42■□□□□ 0.38
MSH4O15457 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.42■□□□□ 0.38
MSH4O15457 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
MSH4O15457 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSH4O15457 PPT1-215ENST00000641471 2368 ntBASIC17.42■□□□□ 0.38
MSH4O15457 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.41■□□□□ 0.38
MSH4O15457 USP32P1-208ENST00000506594 1164 ntBASIC17.41■□□□□ 0.38
MSH4O15457 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 AP001063.1-201ENST00000568332 529 ntBASIC17.41■□□□□ 0.38
MSH4O15457 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH4O15457 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.41■□□□□ 0.38
MSH4O15457 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.41■□□□□ 0.38
MSH4O15457 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
MSH4O15457 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms