Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 HLA-DMA-203ENST00000395305 777 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 AF274858.1-201ENST00000406288 372 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 RNLS-203ENST00000437752 525 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AP002490.2-201ENST00000524791 560 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 MED11-202ENST00000573708 802 ntTSL 2 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AC097359.3-201ENST00000603982 1210 ntBASIC11.83□□□□□ -0.52
COL6A5A8TX70 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
COL6A5A8TX70 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
COL6A5A8TX70 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AL672207.1-201ENST00000328462 1570 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AMT-239ENST00000636865 1914 ntTSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CTBP2P6-201ENST00000526402 1229 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 MT3-203ENST00000565838 421 ntTSL 3 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AL109837.1-201ENST00000603272 613 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AL138781.2-201ENST00000617896 1843 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC142086.5-202ENST00000562500 217 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 AC090510.3-201ENST00000615831 821 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
COL6A5A8TX70 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
COL6A5A8TX70 LRRFIP1P1-201ENST00000498774 2246 ntBASIC11.82□□□□□ -0.52
COL6A5A8TX70 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms