Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 AL121912.1-201ENST00000603683 238 ntBASIC14.34□□□□□ -0.11
CLN6Q9NWW5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 AC012313.10-201ENST00000623509 926 ntBASIC14.34□□□□□ -0.11
CLN6Q9NWW5 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLN6Q9NWW5 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.33□□□□□ -0.11
CLN6Q9NWW5 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 MIR1224-201ENST00000408193 85 ntBASIC14.33□□□□□ -0.12
CLN6Q9NWW5 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 VN2R19P-201ENST00000442399 1052 ntBASIC14.33□□□□□ -0.12
CLN6Q9NWW5 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 PRYP6-201ENST00000514804 343 ntBASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 FAM215A-202ENST00000632077 792 ntBASIC14.33□□□□□ -0.12
CLN6Q9NWW5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.33□□□□□ -0.12
CLN6Q9NWW5 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.32□□□□□ -0.12
CLN6Q9NWW5 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms