Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.1□□□□□ -0.47
CCDC140Q96MF4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC138969.3-201ENST00000546612 1459 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC138932.2-201ENST00000548268 1459 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC126755.4-201ENST00000549796 1459 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC104794.3-201ENST00000566840 1248 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC004790.1-201ENST00000612686 536 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AL158212.4-201ENST00000624062 1286 ntBASIC12.09□□□□□ -0.47
CCDC140Q96MF4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CCDC140Q96MF4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.08□□□□□ -0.47
CCDC140Q96MF4 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 AC148477.4-201ENST00000613430 1793 ntBASIC12.08□□□□□ -0.48
CCDC140Q96MF4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.08□□□□□ -0.48
CCDC140Q96MF4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 SRD5A3P1-201ENST00000603021 949 ntBASIC12.08□□□□□ -0.48
CCDC140Q96MF4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms