Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.19
SKA3Q8IX90 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SKA3Q8IX90 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SKA3Q8IX90 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TARDBPP1-201ENST00000442013 1203 ntBASIC13.89□□□□□ -0.19
SKA3Q8IX90 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC010336.2-201ENST00000564226 506 ntBASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC022532.1-201ENST00000624563 1728 ntBASIC13.89□□□□□ -0.19
SKA3Q8IX90 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC092127.1-201ENST00000567093 3455 ntBASIC13.89□□□□□ -0.19
SKA3Q8IX90 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.89□□□□□ -0.19
SKA3Q8IX90 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SKA3Q8IX90 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms