Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 INGX-202ENST00000489074 768 ntBASIC16.87■□□□□ 0.29
KRT39Q6A163 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.87■□□□□ 0.29
KRT39Q6A163 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.87■□□□□ 0.29
KRT39Q6A163 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 TSPY26P-202ENST00000565928 3884 ntBASIC16.87■□□□□ 0.29
KRT39Q6A163 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.86■□□□□ 0.29
KRT39Q6A163 AL589987.1-201ENST00000453380 819 ntBASIC16.86■□□□□ 0.29
KRT39Q6A163 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
KRT39Q6A163 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
KRT39Q6A163 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
KRT39Q6A163 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 AC144831.1-201ENST00000573312 2656 ntBASIC16.85■□□□□ 0.29
KRT39Q6A163 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
KRT39Q6A163 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
KRT39Q6A163 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
KRT39Q6A163 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
KRT39Q6A163 AC104794.3-201ENST00000566840 1248 ntBASIC16.85■□□□□ 0.29
KRT39Q6A163 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.85■□□□□ 0.29
KRT39Q6A163 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.85■□□□□ 0.29
KRT39Q6A163 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.85■□□□□ 0.29
KRT39Q6A163 AC000095.1-201ENST00000603208 874 ntBASIC16.85■□□□□ 0.29
KRT39Q6A163 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.85■□□□□ 0.29
KRT39Q6A163 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms