Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 MIR8072-201ENST00000614241 80 ntBASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 AL512343.1-201ENST00000605837 169 ntBASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 AL009178.2-201ENST00000597278 2719 ntBASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 FAM45BP-202ENST00000592932 1624 ntBASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC144BQ3MJ40 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.14■□□□□ 0.5
CCDC144BQ3MJ40 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC144BQ3MJ40 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 AC007389.4-201ENST00000454674 793 ntBASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 RARRES2P5-201ENST00000564013 466 ntBASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 AL109954.1-202ENST00000564051 2148 ntBASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC144BQ3MJ40 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC144BQ3MJ40 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC144BQ3MJ40 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC144BQ3MJ40 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC144BQ3MJ40 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms