Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 PPT1-215ENST00000641471 2368 ntBASIC14.16□□□□□ -0.14
FOXF1Q12946 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXF1Q12946 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXF1Q12946 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 AC084364.1-201ENST00000551967 1556 ntBASIC14.15□□□□□ -0.14
FOXF1Q12946 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.15□□□□□ -0.14
FOXF1Q12946 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 AC093004.1-201ENST00000508850 424 ntBASIC14.15□□□□□ -0.14
FOXF1Q12946 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.15□□□□□ -0.14
FOXF1Q12946 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.15□□□□□ -0.14
FOXF1Q12946 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 AL132655.2-201ENST00000596276 594 ntBASIC14.15□□□□□ -0.14
FOXF1Q12946 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.15□□□□□ -0.14
FOXF1Q12946 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 AC073347.1-201ENST00000421633 2643 ntBASIC14.15□□□□□ -0.14
FOXF1Q12946 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
FOXF1Q12946 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
FOXF1Q12946 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXF1Q12946 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
FOXF1Q12946 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
FOXF1Q12946 CLK3P2-201ENST00000427566 1453 ntBASIC14.14□□□□□ -0.15
FOXF1Q12946 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
FOXF1Q12946 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
FOXF1Q12946 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.14□□□□□ -0.15
FOXF1Q12946 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
FOXF1Q12946 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXF1Q12946 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.14□□□□□ -0.15
FOXF1Q12946 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.14□□□□□ -0.15
FOXF1Q12946 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXF1Q12946 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.14□□□□□ -0.15
FOXF1Q12946 AC055876.2-201ENST00000531834 546 ntBASIC14.14□□□□□ -0.15
FOXF1Q12946 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms