Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDH1Q08174 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 C8orf49-201ENST00000525043 1968 ntBASIC15.11■□□□□ 0.01
PCDH1Q08174 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PCDH1Q08174 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH1Q08174 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH1Q08174 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH1Q08174 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH1Q08174 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH1Q08174 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH1Q08174 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH1Q08174 AC097493.3-201ENST00000509725 367 ntBASIC15.1■□□□□ 0.01
PCDH1Q08174 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH1Q08174 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH1Q08174 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH1Q08174 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH1Q08174 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
PCDH1Q08174 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 AL161772.1-201ENST00000610494 4412 ntBASIC15.1■□□□□ 0.01
PCDH1Q08174 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH1Q08174 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH1Q08174 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PCDH1Q08174 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 AC138969.3-201ENST00000546612 1459 ntBASIC15.09■□□□□ 0.01
PCDH1Q08174 AC138932.2-201ENST00000548268 1459 ntBASIC15.09■□□□□ 0.01
PCDH1Q08174 AC126755.4-201ENST00000549796 1459 ntBASIC15.09■□□□□ 0.01
PCDH1Q08174 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDH1Q08174 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PCDH1Q08174 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
PCDH1Q08174 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.09■□□□□ 0.01
PCDH1Q08174 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDH1Q08174 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 AC092183.1-201ENST00000469884 875 ntBASIC15.09■□□□□ 0.01
PCDH1Q08174 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PCDH1Q08174 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.09■□□□□ 0.01
PCDH1Q08174 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDH1Q08174 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.09■□□□□ 0.01
PCDH1Q08174 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PCDH1Q08174 AL590560.3-201ENST00000623350 461 ntBASIC15.09■□□□□ 0.01
PCDH1Q08174 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.09■□□□□ 0.01
PCDH1Q08174 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDH1Q08174 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
PCDH1Q08174 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 KRT18P28-201ENST00000453838 1332 ntBASIC15.09■□□□□ 0.01
PCDH1Q08174 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH1Q08174 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms