Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.46□□□□□ -0.09
RNF4P78317 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.46□□□□□ -0.09
RNF4P78317 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 AC098614.1-201ENST00000368528 745 ntBASIC14.46□□□□□ -0.09
RNF4P78317 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 AP006294.1-201ENST00000415407 339 ntBASIC14.46□□□□□ -0.09
RNF4P78317 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.46□□□□□ -0.09
RNF4P78317 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.46□□□□□ -0.09
RNF4P78317 AC005225.4-201ENST00000557330 545 ntBASIC14.46□□□□□ -0.09
RNF4P78317 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 BRI3BPP1-201ENST00000594224 787 ntBASIC14.46□□□□□ -0.09
RNF4P78317 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.46□□□□□ -0.09
RNF4P78317 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.46□□□□□ -0.09
RNF4P78317 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RNF4P78317 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.46□□□□□ -0.09
RNF4P78317 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
RNF4P78317 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RNF4P78317 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
RNF4P78317 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RNF4P78317 AC007950.2-201ENST00000615045 2347 ntBASIC14.46□□□□□ -0.1
RNF4P78317 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
RNF4P78317 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 AL442647.2-201ENST00000429864 857 ntBASIC14.45□□□□□ -0.1
RNF4P78317 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 RPL13AP25-201ENST00000484130 612 ntBASIC14.45□□□□□ -0.1
RNF4P78317 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.45□□□□□ -0.1
RNF4P78317 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.45□□□□□ -0.1
RNF4P78317 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
RNF4P78317 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms